Overview
dnanexus-integration is an open-source data skill for Claude Code and compatible agents, published by K-Dense-AI. Its author describes it as: “Build and operate reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Use for DNAnexus data transfers, dxapp.json development, execution monitor…”. The project has 34k stars on GitHub and is available under the MIT license. Add it to your setup with `git clone https://github.com/K-Dense-AI/scientific-agent-skills ~/.claude/skills/dnanexus-integration`.
What dnanexus-integration does
Use this skill to build, run, and operate DNAnexus workloads without guessing at platform semantics. It covers:
What’s inside
The SKILL.md for dnanexus-integration is organised into these sections:
- Purpose
- Operating Contract
- Install and Authenticate
- Safe Preflight
- Choose the Right Path
- Core Workflows
- Transfer data
- Search accurately with dxpy
- Build an applet
- Launch with explicit controls
- Monitor jobs and analyses
- Chain executions without polling
Installation
Add dnanexus-integration to your agent with:
git clone https://github.com/K-Dense-AI/scientific-agent-skills ~/.claude/skills/dnanexus-integrationReview a skill’s source before installing it — skills can instruct your agent to run commands. This command comes from the skill’s public repository, which is the source of truth for setup steps. New to skills? Read how to install Claude Code skills.
Supported agents
Neither the skill nor its repository names a specific agent. It uses the SKILL.md format, which several agents can load — check the repository for any agent-specific requirements.
License
dnanexus-integration is published under the MIT license.
Strengths
- Clear MIT license — safe to read and adapt within its terms
- Ships in K-Dense-AI/scientific-agent-skills, an established project with 33,821 GitHub stars
- Actively maintained — repository updated in the last 90 days
Author
Topics
Frequently asked questions
- What does dnanexus-integration do?
- Build and operate reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Use for DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.
- How do I install dnanexus-integration?
- Run git clone https://github.com/K-Dense-AI/scientific-agent-skills ~/.claude/skills/dnanexus-integration in your agent, then reload your skills. Review the source at https://github.com/K-Dense-AI/scientific-agent-skills before installing.
- Is dnanexus-integration free to use?
- Yes. dnanexus-integration is free and open source under the MIT license, so you can read, run, and adapt it within that license's terms.
- Where does dnanexus-integration come from?
- dnanexus-integration ships inside K-Dense-AI/scientific-agent-skills, a repository that contains 42 catalogued skills in total. The repository's 33,821 GitHub stars apply to that whole collection, not to this skill on its own.